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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST041534
species: Solanum lycopersicum
miRNA family: MIR169
source: miRBase, original name: sly-MIR169a (MI0008361)

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGCCAAGGATGACTTGCCGG

miRNA*
 GGCAAGTTGTTTTTGGCTATA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 GGTCTATAAGGTTTGCATGAAGTTGAAGAGAGTCAAGTTGCAGCCAAGGATGACTTGCCGGACCAAAAGTTGTGACCATTTTCTAGTTCCGGCAAGTTGT
TTTTGGCTATAAGTTTGCTCTCTTCTTCTCATGTTATCCTCGTTAGACC

dot-bracket secondary structure
((((((..(((...((((((.(..(((((((((.((.(((.(((((((((..((((((((((.(.(((((.......)))))...).))))))))))..)
)))))))).))).)).)))))))))..)))))))...)))...))))))


SIMILARITIES
miRBase vvi-MIR169s: 0.000002

PMRD sly-miR169a: 5e-81

microPC miR169: 0.0001		UniProt no hits

RFAM MIR169_2: 0.000009

Identical with: sly-miR169a from PMRD (MNEST054547)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence

references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"



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