ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR169
source: miRBase, original name: sly-MIR169d (MI0008364)
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCAAGTTATCCTGGCTATC mismatches: 0 bulges: 1 |
pre-miRNA
GAAGAGGGGTTTTATATGAAGTTGAGAGTATTATTTAGTAGCCAAGGATGACTTGCCTACTTCATTTGATATATAGTTTAAAATAATAATATTGACAATA
TTTGTCATTTGGTCGTAGGCAAGTTATCCTGGCTATCTTGACATGCTCGTAATTTTTCATGTAAGACCTTATCTTC
dot-bracket secondary structure
((((((((((((((((((((((((.((((((......(((((((.(((((((((((((((.(((..(((((.(((......((((....)))).....))
).)))))..)))..))))))))))))))))))))))......)))))).))))..))))))))))))))).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
GAAGAGGGGTTTTATATGAAGTTGAGAGTATTATTTAGTAGCCAAGGATGACTTGCCTACTTCATTTGATATATAGTTTAAAATAATAATATTGACAATA
TTTGTCATTTGGTCGTAGGCAAGTTATCCTGGCTATCTTGACATGCTCGTAATTTTTCATGTAAGACCTTATCTTC
dot-bracket secondary structure
((((((((((((((((((((((((.((((((......(((((((.(((((((((((((((.(((..(((((.(((......((((....)))).....))
).)))))..)))..))))))))))))))))))))))......)))))).))))..))))))))))))))).)))))
SIMILARITIES| miRBase bna-MIR169f: 0.000000009 PMRD sly-miR169d: 4e-97 microPC miR169: 0.000009 | UniProt no hits RFAM MIR169_5: 0.00001 |
Identical with: sly-miR169d from PMRD (MNEST054550) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
