miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST054563
species: Solanum lycopersicum
source: PMRD, original name: sly-miR1916

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTTCACTTAGACACCTCAA

miRNA*
 GAAGTGCCTAAGTGAAATTT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 GCCTAACTTATTGGTGACCTCTTAAATTTGGCACGAAATTTCACTTAGACACCTCAAGTAAAGTGATGTTCATTTTAGACAGCTCATGTAAGGTCTTGTT
GTGTCATTTTGATACAACAAAACCCTACATGAGGTGTCTAAAATGAACATCGCCTACTTGAAGTGCCTAAGTGAAATTTCGTGTCAAGTTTAAAGGATCA
CCAATGAATTAGGC

dot-bracket secondary structure
((((((.(((((((((((((.(((((((((((((((((((((((((((.(((.(((((((..(((((((((((((((((((.((((((((.(((.(((((
(((((.....)))))))))).))).)))))))).))))))))))))))))))).))))))).))).)))))))))))))))))))))))))))))).)))
))))))).))))))


SIMILARITIES
miRBase sly-MIR1916: 1e-119

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

Identical with: sly-MIR1916 from miRBase (MNEST041550)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"



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