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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST002661
species: Solanum melongena
miRNA family: MIRf968
source: miRNEST

Taxonomy by NCBI:
Solanum melongena Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTGTAAAGCTCAGGAGGGATA

miRNA*
 TCCATCCTGAGTTTCACTGCT

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GTGCTGTCCTTTCTTTCTGTTTTTTCCCTTTCATAAACTATAGTGAAATATTTTAATTTCTGGTGGAAATGCATGGAGAATCTGTAAAGCTCAGGAGGGA
TAGCGCCATGGATGGCTCTCTTTCATCTTCTTACGCATCTCTATAGCGCTATCCATCCTGAGTTTCACTGCTTTCTTATGCTCTCTTTAATGCATCACAT
TTTTTCCCTGTGTATGGTCTAGGTTTCGATGAAGTTGGATTTGCGCAAGG

dot-bracket secondary structure
((((.((((.((((((.(((..(((((...(((.(((.((.((((...)))).)).))).))).))))).))).))))))...((.((((((((((.(((
((((((.(((((..((..................))...))))).))))))))).)))))))))).)).(((((.((..(((.......((((((.....
.........))))))......)))...)).))))).))))..))))....


SIMILARITIES
miRBase gma-MIR390a: 0.00000000000001

PMRD ghr-miR390c: 0.000000000004

microPC miR390: 0.00000001		UniProt no hits

RFAM MIR390: 0.0000000000003		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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