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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST002771
species: Triphysaria pusilla
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Triphysaria pusilla Triphysaria Rhinantheae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGTGCCAATATC

miRNA*
 TGTTGGAACGGCTCAATCAAA

mismatches: 1
bulges: 0
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pre-miRNA
 TTTTGTAGTAGCTAGTTATGATGTTGGAACGGCTCAATCAAATCAAATCTCCCAAGAATTGGGTCCTTTAGTTTGATTGAGCCGTGCCAATATCATGTTC
CGCTTTGCTTTT

dot-bracket secondary structure
....((((.(((....(((((((((((.(((((((((((((((.(((...(((((...)))))...))).))))))))))))))).)))))))))))...
.)))))))....


SIMILARITIES
miRBase vvi-MIR171i: 7e-21

PMRD vvi-miR171i: 7e-21

microPC miR171: 1e-40		UniProt no hits

RFAM MIR171_1: 1e-19		most similar mature miRNAs

Identical with: miR171 from microPC (MNEST046160)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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