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Species belonging to selected taxon:
Antirrhinum majus
,
Coffea canephora
,
Fraxinus excelsior
,
Ipomoea batatas
,
Mimulus guttatus
,
Mimulus guttatus var. nasutus
,
Mimulus lewisii
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Ocimum basilicum
,
Petunia axillaris subsp. axillaris
,
Salvia miltiorrhiza
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Striga hermonthica
,
Triphysaria pusilla
,
Triphysaria versicolor
,
Capsicum annuum
,
Catharanthus roseus
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST002773
species:
Triphysaria pusilla
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Triphysaria pusilla
Triphysaria
Rhinantheae
Orobanchaceae
Lamiales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AATACTACCTCCGTCCCAAAA
miRNA*
TTGGGACGGAGGGAGTATAAC
mismatches:
2
bulges:
0
View larger
pre-miRNA
TCAAACTTT
AATACTACCTCCGTCCCAAAA
GATTGTCCGGTTTTGACTTTTTCAAATATTTAAGAATTTATTGACTTTTATGATGTGAGATTGCGGCGGA
TGAAGACGTCAATGTCTCCCGCCACCGTCCTAGCATCGCGAGAGGGTATCTTTAGGATTTTGTTCAAAAAATAATCAAATTGGACTAGTTTTGGACTAGT
TTTGGGACACTAAAAAGTGTCAAAGTGGAAATCTTT
TTGGGACGGAGGGAGTATAAC
TTTTCT
dot-bracket secondary structure
.........
.(((((.((((((((((((((
((((.((((..((((((((((((((...............))))(((((.((((((.((..((.(((((.
...((((......)))).)))))..))..)).)))))).)))))(((.((((.((((((..((((((((..((.((......)).)).)))))))).)))
))))))).)))..)))).)))))).)))))))).))
)))))))))))).)))))...
......
SIMILARITIES
miRBase
tae-MIR1122
:
0.00005
PMRD
osa-miRf10322-akr
:
0.000003
microPC
miR1439
:
0.00005
UniProt
no hits
RFAM
MIR1122: 0.00006
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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