miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST003234
species: Arabidopsis thaliana
miRNA family: MIR869
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTGGGTTTGAGATAAGTGAC

miRNA*
 CAGTTATCTAAGCAGCGTC

mismatches: 4
bulges: 2
View larger
pre-miRNA
 GAAGTACCAAGTGTAAAATGATCTGGGTTTGAGATAAGTGACGAAGAAGAATATAATAATAAATCTTTTAGTACTAGAGAAACAGACTCTGTCTTTGATT
TGTAAACCAAACAAGCAGAAGAGGAATCTGGCTACATTCCATCTATGCCTTGCTTGCGATGTTGTTGGAGAGCCAGTCAAGTCCCTCATAGAGTCCTTCT
CCAGAGGTGGCACATGTGCTCTGAATGTACCACTGTCGTTGACGAAGAGAATGAAGCCAAGCTTGTCAGTTATCTAAGCAGCGTCATGGCGTTGGGAAGA
TCT

dot-bracket secondary structure
......((((.(((...(((((....((((.((((((.(((((.((((((.............))))))....((.(((((...((((((((((((..((
(((.......)))))..)))))(((..((((((...(((((.....((.(((....))).))...))))))))))).....)))....))))))).))))
).)).(((((.((((.........)))).))))).(((((.........)))))(((...)))))))).))))))))))...))))).))))))).....
...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q06396|ARF1_ORYSJ: 0.000000000000007

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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