miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040152
species: Arabidopsis thaliana
source: miRBase, original name: ath-MIR832 (MI0005388)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGATTCCCAATCCAAGCAAG

miRNA*
 TGCTGGGATCGGGAATCGAAA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 AAGAAAGAAAAAATAAGTGACAAGTAACAAACATGAGAAAGGTGAAACTTGCTGGGATCGGGAATCGAAAGATCCGAAAGCCAGTCTTTAGAGGATTCTG
AACGGGCTAGTGAAAGTAAACTTGTGATGTGACCATATTGTGCAATATGAATGTAAGTTGGTGGTGTGGTCATCTCACAAGGTGGCTAAGTCATCTCACT
TATTTTCTTAACGAAAGCATCAGCCCGTTTAGCATCATCTTCTTGAAGCTTGCCTTTCGCATCTTTTGATTCCCAATCCAAGCAAGGTTCACCTTTTTTT
TTGCCATGACCTTTACAAAATATCCAAATTTTG

dot-bracket secondary structure
...((((.........((........))...(((((((((((((((.((((((.((((.((((((((((((((.((((((.(((.(((((((((((.(((
((((((((...((((((((...(((((.((((((((((..(.((((..........)))))..)))))))))).))))).((((((...))))))....)
)))))))....(....)....)))))))))))....)))))).))))).))).)))))).)))))))))))))).)))).)))))).)))))))))))..
....))))..)))).((((((......))))))


SIMILARITIES
miRBase ath-MIR832: 2e-174

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"



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