miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000312
species: Brassica napus
miRNA family: MIR158
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCAAATGTAGACAAAGCAA

miRNA*
 TCTTTGTCTATCGTTTGGAAAA

mismatches: 3
bulges: 1
View larger
pre-miRNA
 AATAGCACGTTATATCTGTTCTTCTTTGTCTATCGTTTGGAAAAGATTGATGACGCTATCTACACTTTTCCAAATGTAGACAAAGCAAAACCGTGATGAC
GTCGTAG

dot-bracket secondary structure
....(((((((((....(((...(((((((((.((((((((((((...((((....))))....)))))))))))))))))))))...)))....)))))
)).))..


SIMILARITIES
miRBase aly-MIR158a: 0.0000000003

PMRD bra-miR158: 1e-49

microPC no hits		UniProt no hits

RFAM MIR158: 0.00000002		most similar mature miRNAs

Identical with: bra-miR158 from PMRD (MNEST048394)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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