ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR166
source: miRBase, original name: bna-MIR166d (MI0006477)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGACTGTTGTCTGGCTCGAGG mismatches: 6 bulges: 0 |
pre-miRNA
GTGGTGCGGTTTAGGGCTGAGAGGACTGTTGTCTGGCTCGAGGTCATGAAGAATGAAACCTAAACCTAAATGATTCTCGGACCAGGCTTCATTCCCCCCA
GCCGTTTTATCGCCATATATATGCCCAC
dot-bracket secondary structure
((((.(((((..(.(((((.(.(((.((..((((((..(((((((((..((..............))..)))).)))))..))))))..)).))).).))
))).)...)))))(((....))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
GTGGTGCGGTTTAGGGCTGAGAGGACTGTTGTCTGGCTCGAGGTCATGAAGAATGAAACCTAAACCTAAATGATTCTCGGACCAGGCTTCATTCCCCCCA
GCCGTTTTATCGCCATATATATGCCCAC
dot-bracket secondary structure
((((.(((((..(.(((((.(.(((.((..((((((..(((((((((..((..............))..)))).)))))..))))))..)).))).).))
))).)...)))))(((....))).))))
SIMILARITIES| miRBase ath-MIR166d: 0.0000000000001 PMRD bna-miR166d: 1e-68 microPC miR166: 0.000000006 | UniProt no hits RFAM mir-166: 7e-43 |
Identical with: bna-miR166d from PMRD (MNEST048345) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
