ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR167_1
source: miRBase, original name: bna-MIR167b (MI0006472)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTAA miRNA* AGATCATGTTCGCAGTTTCACC mismatches: 1 bulges: 0 |
pre-miRNA
GGCGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAATTATCTTTCTTTCTCTGTTGACGATGGAAAAGACATGAGTGTTGATTAGATCATGTTCGCA
GTTTCACCCGTTGACTGTCTCGCC
dot-bracket secondary structure
((((...(((((.(.(.(((((((((.(((((((((((((((.((((((((.((((((...)))))))))))...)))...))))))))))))))).)))
)))))).).).)).)))...))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
GGCGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAATTATCTTTCTTTCTCTGTTGACGATGGAAAAGACATGAGTGTTGATTAGATCATGTTCGCA
GTTTCACCCGTTGACTGTCTCGCC
dot-bracket secondary structure
((((...(((((.(.(.(((((((((.(((((((((((((((.((((((((.((((((...)))))))))))...)))...))))))))))))))).)))
)))))).).).)).)))...))))
SIMILARITIES| miRBase bra-MIR167d: 3e-66 PMRD bra-miR167d: 3e-66 microPC miR167: 0.000000000007 | UniProt no hits RFAM MIR167_1: 3e-20 |
Identical with: bra-miR167d from PMRD (MNEST048402) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
