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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040271
species: Brassica napus
miRNA family: MIR168
source: miRBase, original name: bna-MIR168 (MI0006470)

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGCTTGGTGCAGGTCGGGAA

miRNA*
 CCCGCCTTGTATCAAGTGAAT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TTACGGCGGCCTCTGACTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACCGCCACGTGGCTTTCCATGGTTGGCTTGTGAGCAGGGATCGGATCCC
GCCTTGTATCAAGTGAATCCGAGTCCGACGTGA

dot-bracket secondary structure
(((((.(((.(((.((.((((((((((((((.(((((.((((((.(((.(((..(((((((((....)))))..)))).))).)))...)))))).))))
).)))))))))))))).)).))).))).)))))


SIMILARITIES
miRBase ath-MIR168b: 1e-22

PMRD bna-miR168: 1e-71

microPC miR168: 0.000000000002		UniProt no hits

RFAM MIR168: 6e-28

Identical with: bna-miR168 from PMRD (MNEST048349)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"



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