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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040289
species: Brassica napus
miRNA family: MIR171
source: miRBase, original name: bna-MIR171e (MI0006454)

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGCCGTGCCAATATCACG

miRNA*
 AGATATTGGTGTGGTTCAATC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 CAATACGAGATATTGGTGTGGTTCAATCAGAAAACCACACTCTTTTGTTGTAGAGATCGGTTTGTTTGATTGAGCCGTGCCAATATCACGAG

dot-bracket secondary structure
.....((.((((((((..((((((((((((((((((...((((........))))...))))).)))))))))))))..)))))))).))..


SIMILARITIES
miRBase bra-MIR171a: 4e-43

PMRD bna-miR171e: 3e-47

microPC miR171: 0.000000001		UniProt no hits

RFAM MIR171_1: 7e-30

Identical with: bna-miR171e from PMRD (MNEST048367)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"



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