ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR171_1
source: miRBase, original name: bna-MIR171g (MI0005771)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATCT miRNA* ATATTGGCCTGGTTCACTCAGA mismatches: 3 bulges: 0 |
pre-miRNA
GATATTGGCCTGGTTCACTCAGATTACACACGTACTATATGCATTCTCTTAGTTATCTGATTGAGCCGCGCCAATATCTC
dot-bracket secondary structure
(((((((((.(((((((.((((((.........((((............)))).)))))).))))))).)))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR, cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
[2] Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM, FEBS Lett. 581:1464-1474(2007)., "Computational identification of novel microRNAs and targets in Brassica napus"
GATATTGGCCTGGTTCACTCAGATTACACACGTACTATATGCATTCTCTTAGTTATCTGATTGAGCCGCGCCAATATCTC
dot-bracket secondary structure
(((((((((.(((((((.((((((.........((((............)))).)))))).))))))).)))))))))..
SIMILARITIES| miRBase bra-MIR171e: 5e-24 PMRD bna-miR171g: 4e-40 microPC miR171: 0.00000002 | UniProt no hits RFAM MIR171_1: 8e-23 |
Identical with: bna-miR171g from PMRD (MNEST048369) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR, cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
[2] Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM, FEBS Lett. 581:1464-1474(2007)., "Computational identification of novel microRNAs and targets in Brassica napus"
