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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Eucalyptus globulus
,
Eucalyptus gunnii
,
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Limnanthes alba
,
Paullinia cupana var. sorbilis
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Theobroma cacao
,
Tropaeolum majus
,
Carica papaya
,
Citrus clementina
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST046394
species:
Brassica napus
miRNA family:
MIR162
source:
microPC, original name:
miR162
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCA
miRNA*
GAGGCAGCGGTTCATCGATC
mismatches:
4
bulges:
0
View larger
pre-miRNA
TG
GAGGCAGCGGTTCATCGATC
AATTCCTGTGAAAAATGATGTTGGAAACAATTTACATGGCAAGCATGAATCGA
TCGATAAACCTCTGCATCCA
dot-bracket secondary structure
.(
((.((((.((((.(((((((
.((((.(((.....(((..((((....))))...))).....))).)))).))
))))).)))).)))).))).
SIMILARITIES
miRBase
ath-MIR162b
:
0.000000000001
PMRD
ath-miRf10254-akr
:
0.000000000001
microPC
miR162
:
5e-49
UniProt
no hits
RFAM
MIR162_2: 0.00000000002
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record