miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040312
species: Brassica rapa
miRNA family: MIR160
source: miRBase, original name: bra-MIR160a (MI0010650)

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATGCCA

miRNA*
 GCGTATGAGGAGCCATGCATA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TATGTGTAGTTGTATAAGATGTGTATGCCTGGCTCCCTGTATGCCATCCTCTAAGCTCATCGACCATTGATGACCTCCGTGAATGGCGTATGAGGAGCCA
TGCATATTTTCATATACATTTACATAC

dot-bracket secondary structure
..(((((((.((((((.((...((((((.(((((((..(((((((((.(.(..((.(((((((...))))))).))..).).)))))))))..)))))))
.))))))..)).)))))).))))))).


SIMILARITIES
miRBase aly-MIR160a: 2e-24

PMRD bra-miR160a: 5e-68

microPC miR160: 2e-39		UniProt no hits

RFAM mir-160: 3e-20

Identical with: miR160 from microPC (MNEST046225)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"



Liczniki na strone;