miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002874
species: Carica papaya
miRNA family: MIRf968
source: miRNEST

Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTGTTAAGCTCAGGAGGGATA

miRNA*
 TCCATCCTGAGTTTCACTGCT

mismatches: 4
bulges: 0
View larger
pre-miRNA
 AAAAGTAGAGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGCGGGTCTTGAATCTTGATCTTCATTTGCGCTATCCATCCTGAGTTTCACTGCTT
CTTCTTACTCTC

dot-bracket secondary structure
.......((((((((...((.((((((((((.(((((((((.((((.(((((.........)))))))))..))))))))).)))))))))).))...))
))))))......


SIMILARITIES
miRBase csi-MIR390: 1e-16

PMRD ghr-miR390b: 0.00000000000002

microPC miR390: 3e-35		UniProt no hits

RFAM MIR390: 4e-50		most similar mature miRNAs

Identical with: miR390 from microPC (MNEST045151)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;