miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Eucalyptus globulus
,
Eucalyptus gunnii
,
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Limnanthes alba
,
Paullinia cupana var. sorbilis
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Theobroma cacao
,
Tropaeolum majus
,
Carica papaya
,
Citrus clementina
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST046761
species:
Citrus clementina
source:
microPC, original name:
miR398
Taxonomy by NCBI:
Citrus clementina
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCACCCCTT
miRNA*
GGAGTGATCCTGAGAACAGAGG
mismatches:
2
bulges:
1
View larger
pre-miRNA
GA
GGAGTGATCCTGAGAACAGAGG
GTGGCGTTGGCTTAAATTTGATTTGCATTGCTGCTGCCTGCTCCTGCCATACATTAAATCAAAAAGATTGTATGTG
GCCAACGCACCT
TGTGTTCTCAGGTCACCCCTT
dot-bracket secondary structure
((
((.((((.((((((((((.(((
(((.((((((((............(((..((....)).)))......((((((....(((.....))))))))).)
))))))))))))
).)))))))))))))).))))
SIMILARITIES
miRBase
csi-MIR398
:
1e-71
PMRD
ghr-miR398
:
0.000006
microPC
miR398
:
2e-70
UniProt
no hits
RFAM
MIR398: 0.0000001
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record