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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000379
species: Citrus reticulata
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TATTGGTGCGGTTCAATAAGA

miRNA*
 TGATTGAGCCGTGCCAATATC

mismatches: 1
bulges: 0
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pre-miRNA
 ATGGATGGGTACAACGGGATATTGGTGCGGTTCAATAAGAAAACGGTGCTCAATACTTTTTGAGCTCCGCTTTTTGATTGAGCCGTGCCAATATCACGTG
CCACTCGC

dot-bracket secondary structure
...((..(((((.....(((((((((((((((((((.(((((.(((.((((((......)))))).))).))))).)))))))))))))))))))..)))
))..))..


SIMILARITIES
miRBase crt-MIR171: 1e-56

PMRD vvi-miR171c: 4e-22

microPC miR171: 5e-40		UniProt no hits

RFAM MIR171_1: 1e-22		most similar mature miRNAs

Identical with: miR171 from microPC (MNEST046797)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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