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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000399
species: Citrus sinensis
miRNA family: MIRf917
source: miRNEST

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCTCTCTCTCTTCTGTCAAAT

miRNA*
 GGCATGGATGGATGGCCA

mismatches: 5
bulges: 1
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pre-miRNA
 CATATGGTTGGTGGCATGGATGGATGGCCAGTGACAAGTGTCTCCAAGCAGGTATCTGGAAATCAAACCACTGTCACAGCAAGGCATCTTCCTCAGCCAC
TATGGCAAAACCACTCTCAGGATCCTCCACCTGATCGTTACCTTCAGTGTTCAACAGCTGGGACTGGTTTCTCTGGTCCTGGAATTCCTTGTGGAGGATG
CTTCACAGGAGTTGCTGAACTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAACCATGG

dot-bracket secondary structure
..((((((((((((((.(((.(((.(((..((((((.(((..((((..........))))........)))))))))....(((((((((((...((((.
..))))......((....((((...((((...(((((..(((.(((((........)))))....))).....))))).))))..)))).))))))))))
))).(((((((((....)))))...))))))).))).)))..)))))..))))))))).


SIMILARITIES
miRBase far-MIR529: 0.0000002

PMRD gra-miR157d: 0.00000000006

microPC miR157: 0.00005		UniProt no hits

RFAM mir-156: 0.001		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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