miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST041230
species: Citrus sinensis
miRNA family: MIR169
source: miRBase, original name: csi-MIR169 (MI0013300)

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAGCCAAGAATGACTTGCCGA

miRNA*
 GGCAGGCCATTCTTGTCTCAA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 ATCAAGTGCTACCTTATATACAGAATAGAAAGAATAACAAAGGTTGGAAATTGGTCTAGGGTTTCTTATATGAAGGGATAAATAGAGGATCTAGAGCCAA
GAATGACTTGCCGACGGCATTGACCATAATATCATACGGCAGGCCATTCTTGTCTCAACTCCGCTCTCTATCTTCTCATCTGAGACTCTCGGACACTGAC
AACCAACCTCAGCAATGCAGCACCAGATGATTCTTTCTATTCTCAGGTGATCTATGATACTATGCTCATCTAATGAGCTCTGCGTCACATTTTTATTTTT
CCCCCATTTTTCTGACTTCTCCTCCTTGAGCCATTTTTCCAGATCCATGAACAGTACAAAATCTCTATTACAACCAACAGAGTTAAGCAATGCTGTTCTT
AATCATAAGCTTATTTTAGGGTGGCATATATTTTGCAATAATCTAGTTAGAAATAATTAAAAGTTTTTTCTTGGAGCTTTGGCGTTTCTCCTGGCATTTG
TACAACCTTTTATGCAAACAGTTGTAGAATTGGGGATGACACAATCTTTGGTTGGAGTGTGATTTTATGCTGTATTTATTATGCACACAATAGCAGGCTC
GTCGATCCTCTGTTCATGCAAGAACTAGAGCGAAGGAATAGATAGCTTGATTATCGAACAAATTAAAATAATTAATCGTGCATCAATTTTGACAAGGAGT
GAGGAACCTCTCCTCATCTGCATTATCATGAAATTTTAATAATTTTGTACATATC

dot-bracket secondary structure
.....((((....((((....((((((((((((((.....(((((((......((((((((((((....((((..(((((.(.((.(((....(((.(((
(((((.(((((((..(..((((....))))..)...))))))).)))))))).)))...))).)).).)))))..))))..)))))))).))))......
..)))))))..((......))........))))))))))))))(((((((....(((..(...((((((...))))))...)..))).............
................((((((((((((......................((((((.((((((.(.(((.((((((((((((((..(((((((..((((.
.................))))..))))......))).......((((((....))))))...............)))))))..((.((((((..((.((.
((((((..(((....)))..)))))).)).)))))).)).)).....))))))).)))).)))))).)))))).......((((((.(.((((((((((.
(((..((((.(((((............))))).))))...))))))))).)))).).....(((((.....))))).)))))).........))))))).
)))))........)))))))..................))))....)))).....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC miR169: 5e-29		UniProt no hits

RFAM no hits

Identical with: miR169 from microPC (MNEST046402)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
evidence: Northern

references
[1] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"



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