ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR397
source: miRBase, original name: csi-MIR397 (MI0016708)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATTGAGTGCAGCGTTGATG miRNA* CCAGCGCTGCACTCGATCATG mismatches: 2 bulges: 0 |
pre-miRNA
CCAGATTGAAAAAAACATCATTGAGTGCAGCGTTGATGAATATTTGTCGGTGCTTTGCCAATATTTCTCTATACTAGCCAGGATTCTTTCACCAGCGCTG
CACTCGATCATGTTTTTTAGCTCTGCTGGTTCAGGATTATCCAGATAATACGCACA
dot-bracket secondary structure
((((...(((((((((((.((((((((((((((((.((((.....(((.(.(((.....................))))..)))...)))).))))))))
)))))))).)))))))))...))..))))....((.....))..............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
CCAGATTGAAAAAAACATCATTGAGTGCAGCGTTGATGAATATTTGTCGGTGCTTTGCCAATATTTCTCTATACTAGCCAGGATTCTTTCACCAGCGCTG
CACTCGATCATGTTTTTTAGCTCTGCTGGTTCAGGATTATCCAGATAATACGCACA
dot-bracket secondary structure
((((...(((((((((((.((((((((((((((((.((((.....(((.(.(((.....................))))..)))...)))).))))))))
)))))))).)))))))))...))..))))....((.....))..............
SIMILARITIES| miRBase tcc-MIR397: 0.0000001 PMRD vvi-miR397b: 0.0000005 microPC miR397: 0.000008 | UniProt no hits RFAM MIR397: 0.000009 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
