ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR166
source: microPC, original name: miR166
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGAGG mismatches: 4 bulges: 0 |
pre-miRNA
GGGGAATGTTGTCTGGCTCGAGGCCACTAACTAGATCTTTGATTTAATCTCAGTTGATCATATATTTGTTTCATTTTTCTTCCATAAAATTTAATTATAT
TGAGATACCCATCATTGATCTTAAGATAATTAAGTTAGTGACGTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..((((((..(((.(.(((((((((((((..((((...((((((((((((..((.((((...................)))).)))))).))
))))))....))))..)))))...........)))))))).).)))..))))))..))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGGAATGTTGTCTGGCTCGAGGCCACTAACTAGATCTTTGATTTAATCTCAGTTGATCATATATTTGTTTCATTTTTCTTCCATAAAATTTAATTATAT
TGAGATACCCATCATTGATCTTAAGATAATTAAGTTAGTGACGTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..((((((..(((.(.(((((((((((((..((((...((((((((((((..((.((((...................)))).)))))).))
))))))....))))..)))))...........)))))))).).)))..))))))..))))))))
SIMILARITIES| miRBase ctr-MIR166: 6e-90 PMRD vvi-miR166e: 0.0000000001 microPC miR166: 9e-89 | UniProt no hits RFAM mir-166: 0.0000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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