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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST048473
species: Citrus sinensis
miRNA family: MIR164
source: PMRD, original name: csi-miR164

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGAAGCAGGGCACGTGCA

miRNA*
 CATGTGCCCTTCTTCCCCA

mismatches: 5
bulges: 0
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pre-miRNA
 TGGAGAAGCAGGGCACGTGCATTACTAACTCAACCGCACATACATCTACTAACAAAAATTAATTAATCCACACATTTTGAAGAAACCAAATCAAGAAGCA
GCAAGCTCTTTCTGTTGTTATAGCTCAGTCATGAGTTGAGTTATTTCTTCATGTGCCCTTCTTCCCCA

dot-bracket secondary structure
.((.((((.((((((((((......(((((((((...........(((.((((((....................((((.......))))...(((((.(
(....)).))))).)))))))))...........)))))))))......)))))))))).)))).)).


SIMILARITIES
miRBase csi-MIR164: 2e-92

PMRD ptc-miRf11320-akr: 0.00000000004

microPC miR164: 2e-92		UniProt no hits

RFAM MIR164: 0.0000000007

Identical with: csi-MIR164 from miRBase (MNEST041221)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
[2] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"



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