miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST055405
species: Citrus sinensis
miRNA family: MIRf917
source: miRNEST

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCTCTCTCTCTTCTGTCAAAT

miRNA*
 AAACAGAGCCGAGGAGCAA

mismatches: 4
bulges: 2
View larger
pre-miRNA
 ACTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAACCATGGGGCTCTAAGAACCCGACACCGGGTCATGGAGTGGGTGACTTAATGCATGCCCATACCAA
ATCCGTCACTCAACCAGTATCGCCCCATGGAGCAGCTATTAATCAATATCCAAACATGTCATGGGGTTTCAAGGGCAATGCAGCTGGTAACAGTTCACAC
CAGATGGCCCCACAACTGGGTTTGGCTCCAACATCCGTGCCCATTAACAGTCAGTTTTCTGGTGAGCTGGAGTCGTCTCAACAGAGTAGGCAATACATGA
AACTTCAGCATTCCCAGGGATTATGATGACTCCAACCACCAGATTCATTGGTCCCTCTAAGTGCCGGGTTCTGAAGAAACTTGTGTGCACCAAACACTTC
CCTGGTTTTGTGGTTGCACCGAGAGGCAAGCAAAAATTTAAAGATAGATTCAAGCAATATCACCTTTTAGGGTGGAAATGACGGGAAGCCAAGAGCCATA
AGGAGTGGGTGGCTCCAAGAAGGAAAAAAGCCAAACAGCGAGCGTGACCGGCACATAAACAGAGCCGAGGAGCAAACGGAGAG

dot-bracket secondary structure
.(((......(((((.(((..((((((...((...(((((((((..((.((.((((....)))))).(((..((((((((....................
....)))))))).))).))..))))))))).((((((...........((((.........))))........)))..))).((((((.((.((((...(
(..(((((((((....))))(((((((((..(((...((((....(((.....))).(((((((...((((((((((...........((.(((...(((
....)))..))).)).........))))))))))..)))))))(((.((((.(((..........)))..)))).))).((((.((((((((((.(((..
...))).)).))).))))))))).)))).((...((((((....))))))...))....((((((....))))))..)))...)).))))))).))))).
.))..((..(((((((.....))).....))))..))..)))))).))))))..))..))))))..))))))))....)))..


SIMILARITIES
miRBase far-MIR156b: 0.0000001

PMRD gra-miR157d: 0.0000000000001

microPC miR157: 0.0001		UniProt sp|Q700W2|SPL9_ARATH: 0.00009

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;