ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR399
source: miRBase, original name: ghr-MIR399d (MI0013557)
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCTG miRNA* GGGCAACTCTCCTTAAGCAAA mismatches: 3 bulges: 0 |
pre-miRNA
TGAGGAATTACAGGGCAACTCTCCTTAAGCAAAAATGGATGTGCTTTTCTTTGCATAATTCGATTTTGCCAAAGGAGATTTGCCCTGCCATTCACTCA
dot-bracket secondary structure
.(((((((..((((((((.(((((((..((((((.(((((((((........)))).))))).))))))..))))))).))))))))..)))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
TGAGGAATTACAGGGCAACTCTCCTTAAGCAAAAATGGATGTGCTTTTCTTTGCATAATTCGATTTTGCCAAAGGAGATTTGCCCTGCCATTCACTCA
dot-bracket secondary structure
.(((((((..((((((((.(((((((..((((((.(((((((((........)))).))))).))))))..))))))).))))))))..)))).))).
SIMILARITIES| miRBase tcc-MIR399f: 0.000000000005 PMRD ghr-miR399b: 3e-38 microPC miR399: 3e-38 | UniProt no hits RFAM mir-399: 0.000000000000002 |
Identical with: miR399 from microPC (MNEST045684) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
