ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR2950
source: miRBase, original name: ghr-MIR2950 (MI0013555)
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGTGTGCAGGGGGTGGAATA miRNA* TTCCATCTCTTGCACACTGGA mismatches: 2 bulges: 0 |
pre-miRNA
CATGGGTTTATGTTATATTCCATCTCTTGCACACTGGACTAGCCAGCTTTTTGTTGGCTTCAGCTTCAGGTTGGTGTGCAGGGGGTGGAATACATCATTG
ATATCATG
dot-bracket secondary structure
((((((((.(((...(((((((((((((((((((..(.(((((((((.....)))))))........)).)..)))))))))))))))))))...))).)
)).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
CATGGGTTTATGTTATATTCCATCTCTTGCACACTGGACTAGCCAGCTTTTTGTTGGCTTCAGCTTCAGGTTGGTGTGCAGGGGGTGGAATACATCATTG
ATATCATG
dot-bracket secondary structure
((((((((.(((...(((((((((((((((((((..(.(((((((((.....)))))))........)).)..)))))))))))))))))))...))).)
)).)))))
SIMILARITIES| miRBase vvi-MIR2950: 0.000001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
