ABOUT THIS RECORDspecies: Gossypium raimondii
miRNA family: MIR482
source: miRBase, original name: gra-MIR482 (MI0013536)
Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTCCAATTCCTCCCATTCC miRNA* AATGGAGGAGTTGGAAAGATT mismatches: 0 bulges: 1 |
pre-miRNA
GAAGGAGGAAAAGGAGAGACCGTTTCTGGAAATTTTCGGAATGGAGGAGTTGGAAAGATTTTGAATTTTCTCTGTATTTTAATAATGAAAAATCTTTCCA
ATTCCTCCCATTCCACTGATTTCCAGCACTTCCTCTCCATTTTCTTACCTTT
dot-bracket secondary structure
((((((((((((((((((...((..(((((((((...(((((((((((((((((((((((((..(((................)))..))))))))))))
)))))).)))))))...))))))))).))...)))))).))))))).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
GAAGGAGGAAAAGGAGAGACCGTTTCTGGAAATTTTCGGAATGGAGGAGTTGGAAAGATTTTGAATTTTCTCTGTATTTTAATAATGAAAAATCTTTCCA
ATTCCTCCCATTCCACTGATTTCCAGCACTTCCTCTCCATTTTCTTACCTTT
dot-bracket secondary structure
((((((((((((((((((...((..(((((((((...(((((((((((((((((((((((((..(((................)))..))))))))))))
)))))).)))))))...))))))))).))...)))))).))))))).)))))
SIMILARITIES| miRBase ghr-MIR482a: 0.0000001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
