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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Eucalyptus globulus
,
Eucalyptus gunnii
,
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Limnanthes alba
,
Paullinia cupana var. sorbilis
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Theobroma cacao
,
Tropaeolum majus
,
Carica papaya
,
Citrus clementina
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST048632
species:
Gossypium raimondii
miRNA family:
MIR157
source:
PMRD, original name:
gra-miR157c
Taxonomy by NCBI:
Gossypium raimondii
Gossypium
Malvoideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGAGAGAGAGCAC
miRNA*
CATCACTCATCTCCCATCCAA
mismatches:
10
bulges:
1
View larger
pre-miRNA
TTGACAGAAGAGAGAGAGCAC
GATGAAGATCTTGCGTCGTAGCCATGTTTGAATCAACTCTGGATTCTTCTACACCTACAAAATTTGACCAAATTTGTTA
AGCTTGTATATCAGTTCCATAAGGAGAGCATCATTTTAACAACCATTAAAGGCCTTCAGAAC
CATCACTCATCTCCCATCCAA
dot-bracket secondary structure
..((..(.((((((.((....
..(((((..(((.....((((...(((..(((((.......)))))....))).))))...............((((((
((..((....((...(((....)))))....)).))))))))......)))..)))))....
..)).))).))).)..))...
SIMILARITIES
miRBase
far-MIR529
:
0.0001
PMRD
tae-miR156b
:
0.0000001
microPC
miR157
:
0.0001
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
download this record