miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST048634
species: Gossypium raimondii
source: PMRD, original name: gra-miR160a

Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATGCCT

miRNA*
 TCAAACAGCTGGAAGCCAGACGGA

mismatches: 7
bulges: 3
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pre-miRNA
 ATCAAACAGCTGGAAGCCAGACGGAAACAGTCCGGACTTCAGTTTATTAAGATGGGGATCTGATGAAGATAATCTGACTTGAGCATGCCTGGCTCCCTGT
ATGCCT

dot-bracket secondary structure
..((.((((..(((.(((((.((((.....)))).......(((((...((((....((((.....)))).))))....)))))....))))))))))))
.))...


SIMILARITIES
miRBase far-MIR160: 0.000005

PMRD gra-miR160b: 0.00000000000009

microPC miR160: 0.0003		UniProt sp|Q653H7|ARFR_ORYSJ: 0.0001

RFAM mir-160: 0.00009

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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