miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST048635
species: Gossypium raimondii
source: PMRD, original name: gra-miR160b

Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATGCCT

miRNA*
 GCTACGAGAGAGCTGCTGC

mismatches: 4
bulges: 4
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pre-miRNA
 AACAGCTACGAGAGAGCTGCTGCTCAGTAAGTATCGGCTGACCAAAGAGTAAAAACTGGTGTCTTTTTGTGTTGCCAGATTTCTCATTCACATTAGAATT
CCCGATTGTTAACAAGCAAGAAAGATTATCAGTACCATTAGGGCGCCTTGCCATCATGATGCCATCGGAAATTCTAGAGTGGGGATCGAACCGCTGGAAA
CCGGGCAGAAAAAGTCCGGACTGCAGTTTATTATTAAGATGGAGATCGGATAAAGATAACCCAAATTGAGCATGCCTGGCTCCCTGTATGCCT

dot-bracket secondary structure
....(((((.((.(((((((((((((((...(((((((.((((((((((.............))))))).)))))).((((((.(((((((.((((((((
.(((((((((....)))))............(((.(((...(((.....)))...))).)))..)))).)))))))).)))...........((((.(..
((((((.......))))))..).))))..........)))))))))).......))))......)))))))).))..))))).))))).))..


SIMILARITIES
miRBase far-MIR160: 0.00002

PMRD gra-miR160a: 0.0000000000003

microPC miR160: 0.001		UniProt sp|Q653H7|ARFR_ORYSJ: 4e-18

RFAM mir-160: 0.0003

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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