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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST048637
species: Gossypium raimondii
miRNA family: MIR172
source: PMRD, original name: gra-miR172a

Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAATCTTGATGATGCTGCAT

miRNA*
 TGGCATTAGTGTAGT

mismatches: 13
bulges: 0
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pre-miRNA
 AGAATCTTGATGATGCTGCATGAGAGAACAGTGGCATTAGTGTAGTACTGACCTGACCGTGCATTTGCCACGGCCAATCAGGGACACGTTGTGGAGGATC
GAATTCAACCGGTTTCACCATTGTTCTTTCCTCACTAGGAAAGAATCT

dot-bracket secondary structure
..........((((((..(.((......)))..))))))((((....((((..((.((((((....).))))).)).))))..))))...((((.(((((
(........))))))..)))).((((((((((....))))))))))..


SIMILARITIES
miRBase zma-MIR172d: 0.0001

PMRD gra-miR172b: 4e-72

microPC miR172: 0.0001		UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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