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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002340
species: Raphanus raphanistrum
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCGCCTTGCATCAACTGAAT

miRNA*
 TCGCTTGGTGCAGGTCGGGAC

mismatches: 2
bulges: 0
View larger
pre-miRNA
 AAGGTTATGATAAAGTCACCGTCGGGCTCGGATTCGCTTGGTGCAGGTCGGGACTAATTCGCTGACACAGCCACGTGGCTCTTTTTCTTATTGGTTTGTG
AGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGAGCTCCCACGGTGAAAACAAAAACCAA

dot-bracket secondary structure
..((((.........(((((((.((((((.((((((.((((((((((.((((((((((((.(((.((((((((..................))).)))))
..)))))))))).))))).)))))))))).)))))).)))).)).))))))).......))))..


SIMILARITIES
miRBase aly-MIR168a: 3e-33

PMRD ath-miR168a: 1e-32

microPC miR168: 9e-52		UniProt no hits

RFAM MIR168: 7e-53		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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