miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002359
species: Raphanus raphanistrum
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGTCGTCATCATCATCATCA

miRNA*
GTGAGGATGAGATTTGGGA

mismatches: 2
bulges: 2

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pre-miRNA
CAGATTCTGGTGAGGATGAGATTTGGGAAGATTGTGGAAGGCTTGAAGTCCAAGATAAAGGCAAGTCTAAGGATGCGGAAGAGATCCTCATTATCATCAT
CGTCATCGTCGTCATCATCATCATCATCATCA


dot-bracket secondary structure
..(((..((((((.((((((((.(((((.(((.((((.(((((((................)))))))...((((.(((.....))).)))).)))).))
).)).)))..))).))))).))))))..))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-598: 0.0000005
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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