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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST041083
species: Theobroma cacao
miRNA family: MIR156
source: miRBase, original name: tcc-MIR156d (MI0017456)

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCAC

miRNA*
 GCTTGCTCTCCTTCCGTCACC

mismatches: 3
bulges: 1
View larger
pre-miRNA
 GACCAGGTCTGTCAGGAAGGTGACAGAAGAGAGTGAGCACACAGGGTTCTTTCTTGCATGAGTGCCTCATGCTTGAAACTTTATGTGCTTGCTCTCCTTC
CGTCACCCGCCTCTTTCTCTCCCCC

dot-bracket secondary structure
.....((...(..(((..((((((.((((((((..((((((.((((((...((..(((((((...)))))))..)))))))).))))))..)))).))))
.))))))..)))....)...))...


SIMILARITIES
miRBase ptc-MIR156b: 4e-16

PMRD ptc-miR156b: 4e-16

microPC miR156: 0.00000003		UniProt no hits

RFAM mir-156: 0.0000000000001

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"



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