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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Eucalyptus globulus
,
Eucalyptus gunnii
,
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Limnanthes alba
,
Paullinia cupana var. sorbilis
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Theobroma cacao
,
Tropaeolum majus
,
Carica papaya
,
Citrus clementina
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST041106
species:
Theobroma cacao
miRNA family:
MIR169
source:
miRBase, original name:
tcc-MIR169e
(
MI0017479
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGA
miRNA*
GGCAAGTTGTCCTTGGCTACA
mismatches:
3
bulges:
0
View larger
pre-miRNA
TAGGCACAGAAAGTGAAGTG
CAGCCAAGGATGACTTGCCGA
TTCTTTCTCTTATATCCATTCAGTTTTACCAACACTAGCAACTCATATGTAAAGACGAA
TTTAAATC
GGCAAGTTGTCCTTGGCTACA
TGTTTCTTTTTGCTCCAC
dot-bracket secondary structure
..((..(((((((....(((
.(((((((((..(((((((((
((..(((((((((((.......(((...........))).......)))).)))).)))
....))))
)))))))..))))))))).))
)....)))))))..))..
SIMILARITIES
miRBase
tcc-MIR169a
:
2e-58
PMRD
bna-miR169b
:
0.000000002
microPC
miR169
:
0.00003
UniProt
no hits
RFAM
MIR169_2: 0.000000009
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"