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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST041120
species: Theobroma cacao
miRNA family: MIR171
source: miRBase, original name: tcc-MIR171e (MI0017493)

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGTGCCAATATC

miRNA*
 TGTTGGCTCGGTTCACTCAGA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TTGGTTGCAATAGTCACTACGATGTTGGCTCGGTTCACTCAGACAAAATCAACCCTACGCTTCTCAAGCACACACACACAAAAAAAAGAGCTTTAGATTT
TGCGTATCTTCCATGTGTTTTGATTGAGCCGTGCCAATATCCTAGTGCCTTTTCAATTCAC

dot-bracket secondary structure
..(((((.((.((.(((((.(((((((((.(((((((.(((((((..........(((((.(((.((((....................)))).)))...
.))))).........)).))))).))))))).))))))))).))))).)).)))))))...


SIMILARITIES
miRBase rco-MIR171f: 0.0000001

PMRD vvi-miR171c: 0.000002

microPC miR171: 0.000002		UniProt no hits

RFAM MIR171_1: 0.0000002

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"



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