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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Eucalyptus globulus
,
Eucalyptus gunnii
,
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Limnanthes alba
,
Paullinia cupana var. sorbilis
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Theobroma cacao
,
Tropaeolum majus
,
Carica papaya
,
Citrus clementina
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST041125
species:
Theobroma cacao
miRNA family:
MIR172
source:
miRBase, original name:
tcc-MIR172b
(
MI0017498
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGAATCTTGATGATGCTGCAT
miRNA*
GCAGCATTATCAAGATTCATA
mismatches:
2
bulges:
0
View larger
pre-miRNA
ATCAGTCGTTTTTTGCTGCT
GCAGCATTATCAAGATTCATA
TGCAAATATAGTACGGCAGCCGTGGTCCCGGTACCGCGATTGTTTTTTTTCAGATGCCA
TAGCTTTTATTTGAGCATG
AGAATCTTGATGATGCTGCAT
CGGCCATAAATGACTTCACA
dot-bracket secondary structure
...((((((((...((((.(
((((((((((((((((((.((
((((((((.(((..((((..((((((......)))))).(((........))).)))).
..)))..)))))..)))))
.))))))))))))))))))).
))))...)))))))).....
SIMILARITIES
miRBase
gma-MIR172a
:
0.000000000002
PMRD
gma-miR172a
:
0.000000000002
microPC
miR172
:
0.000002
UniProt
no hits
RFAM
mir-172: 0.00000000004
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"