ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR390
source: miRBase, original name: tcc-MIR390a (MI0017503)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCCATCCTGAGTTTCA mismatches: 2 bulges: 0 |
pre-miRNA
TTAGTATAGAAGAGCCTGTTAAGCTCAGGAGGGATAGCGCCATTGATGATCTTGAATCTTATGGATTGTATAATCTGATCCTCATTAGCGCTATCCATCC
TGAGTTTCATCGGTTCTTCTTGCTCTTGC
dot-bracket secondary structure
..((((.(((((((((.((.((((((((((.(((((((((...(((.((((..((...(((((.....))))))).)))).)))...))))))))).)))
))))))).)).))))))))))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
TTAGTATAGAAGAGCCTGTTAAGCTCAGGAGGGATAGCGCCATTGATGATCTTGAATCTTATGGATTGTATAATCTGATCCTCATTAGCGCTATCCATCC
TGAGTTTCATCGGTTCTTCTTGCTCTTGC
dot-bracket secondary structure
..((((.(((((((((.((.((((((((((.(((((((((...(((.((((..((...(((((.....))))))).)))).)))...))))))))).)))
))))))).)).))))))))))))).....
SIMILARITIES| miRBase ghr-MIR390b: 3e-17 PMRD ghr-miR390b: 3e-17 microPC miR390: 0.00000003 | UniProt no hits RFAM MIR390: 0.0000000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
