ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR398
source: miRBase, original name: tcc-MIR398b (MI0017518)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTT miRNA* GGGGTGCCACCTAAGAACCCAGG mismatches: 2 bulges: 2 |
pre-miRNA
CAGCCAGATGGTTTACCACGAAGGGGTGCCACCTAAGAACCCAGGCGGTTTGGCCTGAGCTAGGCCTTTGCCAAGCTGCTATGAAAAGGAAGGCTGAATG
CTAATGCAGCCAGCAGCAACCGGTTGTGTTCTCAGGTCACCCCTTCGCGGTACTTCTATCTTCGC
dot-bracket secondary structure
..((.((((((..((((.((((((((((..((((.(((((.(((.((((..((((((...))))))........((((((...........(((((.((.
...)).))))))))))).)))).))).))))).)))))))))))))).))))...))))))..))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
CAGCCAGATGGTTTACCACGAAGGGGTGCCACCTAAGAACCCAGGCGGTTTGGCCTGAGCTAGGCCTTTGCCAAGCTGCTATGAAAAGGAAGGCTGAATG
CTAATGCAGCCAGCAGCAACCGGTTGTGTTCTCAGGTCACCCCTTCGCGGTACTTCTATCTTCGC
dot-bracket secondary structure
..((.((((((..((((.((((((((((..((((.(((((.(((.((((..((((((...))))))........((((((...........(((((.((.
...)).))))))))))).)))).))).))))).)))))))))))))).))))...))))))..))
SIMILARITIES| miRBase gra-MIR398: 0.0000001 PMRD vvi-miR398a: 0.00003 microPC miR398: 0.00003 | UniProt no hits RFAM MIR398: 0.0006 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
