miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Cucumis melo subsp. melo, Eucalyptus globulus, Eucalyptus gunnii, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Limnanthes alba, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Paullinia cupana var. sorbilis, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Trifolium pratense, Tropaeolum majus, Vitis shuttleworthii, Bruguiera gymnorhiza, Cajanus cajan, Carica papaya, Cicer arietinum, Citrus clementina, Glycine max, Arabidopsis thaliana, Vigna unguiculata, Vitis vinifera, Medicago truncatula, Brassica oleracea, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST048392
species: Brassica oleracea
miRNA family: MIR824
source: PMRD, original name: bol-miR824

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGACCATTTGTGAGAAGGGA

miRNA*
 CCTTCTCATCGATGGTCTAGA

mismatches: 1
bulges: 0
View larger
pre-miRNA
 CCTCGAGTTGTCTTTCATGTCTAGACCATTTGTGAGAAGGGATTTTTTGTTTGCACCGTTCACCCCACTTTCAATCTGTAGTGAGTATTAAGGAAAATAG
CTTGTTCAACATATCACACTACTCTTTTAGAAACAATACTATATTTTAGATGCTTTTCCAGCTTGATATACGTTGTTTTGTTATGTATATCTGTATTATC
CCGGCTACCAAAACGTTAAGAAATAAGGTGAACATCCTAAAACCTGCATCCAATTAGAAAGGTCTAGGTCACAGATATTACTTGTTATCTCTTGATTAAG
CTATTTTATTTCTATCAGCATGATCAGATCATTCAGGAGTTAAGTATAAACTAAAATACATTAAGTCCATTCATGACATTTCTGGATGCTGCATACATAA
TATTTTCCTTGTTTTTGGACTATGCCACACTTCGGACAGACATTTTGCCTAAGAGATGTCAAACCTCTGTCTGGAGTGTTAGAGGTATTTCATGATAGCT
AAGAACTTGAATCTTGCACTACTTAGCTACACTAGATTACTTCATAGTAAATAACTTGGGGAGTGGGGGAAGGTGCTGGGNTATTATTCCCTTCTCATCG
ATGGTCTAGATGTGCGAGGTGACTCTCATTGAGG

dot-bracket secondary structure
((((((((..((((.(((((((((((((((.(((((((((((..........(((((.(((.(((((((..(....(((((((((((....(((((..((
(.................(((......)))........(((.....)))..)))))))).((..(((((((((.........))))))))).......((
..(((((.((....(((.((((((((((.(((.............(((((((....((((.(((..((((..(((((........)))))..((((((.(
((..(........)..))).)))))))))).....(((.((((((((........)))).)))).)))......))).)))))))))))...........
..))).)))))))))).))).(((((((((((((((((((((((((......)))))))).......))))))))))))....)))))....)).)))))
..))...........))..)))))).))))).....(((((....)))))........)..)))))))))))))))...........))))))))))).)
)))))))))))))).))))..)))).....))))


SIMILARITIES
miRBase no hits

PMRD bra-miR824: 0

microPC no hits		UniProt no hits

RFAM MIR824: 0

Identical with: bol-MIR824 from miRBase (MNEST040309)

MORE

miRNEST target predictions
non-miRNEST targets: none
additional data
download this record

references
[1] Kutter C, Schob H, Stadler M, Meins F Jr, Si-Ammour A, Plant Cell. 19:2417-2429(2007)., "MicroRNA-mediated regulation of stomatal development in Arabidopsis"



Liczniki na strone;