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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Cucumis melo subsp. melo, Eucalyptus globulus, Eucalyptus gunnii, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Limnanthes alba, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Paullinia cupana var. sorbilis, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Trifolium pratense, Tropaeolum majus, Vitis shuttleworthii, Bruguiera gymnorhiza, Cajanus cajan, Carica papaya, Cicer arietinum, Citrus clementina, Glycine max, Arabidopsis thaliana, Vigna unguiculata, Vitis vinifera, Medicago truncatula, Brassica oleracea, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST054381
species: Phaseolus vulgaris
miRNA family: MIR399
source: PMRD, original name: pvu-miR399a

Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCAAAGGAGAGTTGCCCTG

miRNA*
 GGGCTTCTCTTTGTTGGCAGG

mismatches: 4
bulges: 0
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pre-miRNA
 TGCACAAGATATTATAGTCAATAAGCAAACCAGTTATAGGGCTTCTCTTTGTTGGCAGGAAATGACATGACCACTTCATGAAATATCTTGCCAAAGGAGA
GTTGCCCTGTTGCTGCTTTAGCTTAATATGTAATCTTCTATGCTATTCAGTGCATATGATCATTCACTCCATTGAAGAGAAGCACTGAAGTAGTATGCAA
GGGATCAAACAAATGACTTCATC

dot-bracket secondary structure
...............(((((.((((((((.((((.(((((((..(((((..(((((((((.((..(((((.....)))))..)).)))))))))..))))
)..))))))).)))).))).)))))...((...((((.(((((((((((((((...(((....)))(((.......)))..)))))).))))))))).))
))...))......))))).....


SIMILARITIES
miRBase pvu-MIR399a: 5e-125

PMRD mtr-miR399g: 0.0000000008

microPC miR399: 2e-28		UniProt no hits

RFAM mir-399: 0.000000000000001

Identical with: pvu-MIR399a from miRBase (MNEST041027)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"



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