ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR482
source: miRBase, original name: vvi-MIR482 (MI0007971)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTCCTACTCCTCCCATTCC miRNA* AATTGGAGAGTAGGAAAGCTT mismatches: 2 bulges: 1 |
pre-miRNA
AATGTTTGGGAATTGGAGAGTAGGAAAGCTTAGCCATCTATTCCCTTCATGGTTTCCTCTCCATGGATTGGGGGTCTAGAGCTAGTCTTTCCTACTCCTC
CCATTCCTATTGTTTTC
dot-bracket secondary structure
......(((((((.((((((((((((((.(((((..((((..((((((((((........))))))....))))..))))))))).)))))))))).)))
).)))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
AATGTTTGGGAATTGGAGAGTAGGAAAGCTTAGCCATCTATTCCCTTCATGGTTTCCTCTCCATGGATTGGGGGTCTAGAGCTAGTCTTTCCTACTCCTC
CCATTCCTATTGTTTTC
dot-bracket secondary structure
......(((((((.((((((((((((((.(((((..((((..((((((((((........))))))....))))..))))))))).)))))))))).)))
).)))))))........
SIMILARITIES| miRBase pab-MIR482c: 0.000000002 PMRD vvi-miR482: 5e-62 microPC miR482: 0.000001 | UniProt no hits RFAM no hits |
Identical with: vvi-miR482 from PMRD (MNEST054895) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
