Parental gene:

PCED1A, ENSBTAG00000003863

Aliases:PCED1A, FAM113A
Description:protein FAM113A [Source:RefSeq peptide;Acc:NP_001069816]
Organism:Cow (Bos taurus)
Coordinates:13:52809043..52814153(+)


>ENSBTAG00000003863
ATGGTCTTCTGTCTGGAGAACGAGGAGCCGTGCCGCCCGCAGCGAAGCAACATGGTCCGTTTCCAGGCCTCGGAAGTCCA
GCAGCTGCTACACAACAAGTTCGTGGTCATCTTGGGGGACTCAATCCAGCGGTCTGTGTATAAAGACCTGGTGCTCCTGC
TCCAGAAAGACTCACTGCTCACAGCTGCCCAGCTGAAAGCCAAGTACCTCGAGGGAGTCCTGGAGGAGCTGACATATGGG
CCTGCCCCGGACCTGGTGATCATCAACTCCTGCCTCTGGGATCTCTCCAGGTATGGCCGCTGCTCAATGGAGAGCTACCG
AGAGAACCTGGAGCGAGTGTTCGTGCGCATGGACCAGGTGTTGCCAGATTCCTGCCTGCTGGTGTGGAACATGGCAATGC
CCCTAGGAGAGCGTATCACTGGGGGTTTCCTTCTGCCTGAGCTCCAGCCCCTGGCAGGCTCTCTGCGGCGGGATGTGGTT
GAAGGGAACTTCTACAGTGCTACTCTGGCTGGGGACCACTGCTTTGATGTCTTAGACCTCCACTTTCACTTTCGGCATGC
AGTACGGCACCGTCACCGGGATGGTGTCCATTGGGACCAGCATGCCCACCGCCACCTCTCACATTTGCTTCTGACCCATG
TGGCCGATGCCTGGGGTGTGGAGCTGCCCAAGCGTGACTATCCCCATGACCCATGGATTAAAGACTGGCCAGAGCCGGAT
CATCTCTTCCAGGGGAGCCAGGGGCAGCCCTCAGACTTCGGGGAGCAGCCGGCCTTGCCCCCACTCTCTCCCTTACCTCC
TCCCATGCCTTTTCCCTATCCTCTTCCTCAGCCTTCCCTACCTCCACTGTTTCCACCCCTGCCCCAAGAACCCCCTTTTT
TCCCAGGCCAGCCCTTCCCACCCTGTGAATTCTTCAATTTTAATCCAATGGAAGACTTCTCGATACCACCCCACTTAGGA
TGTGGCCCTGGAGTGAACTTTGTGCCTGGCCCCGTGCCTCCTCCAGTCCCCAGCCCTGTCCGCCATGGTCAGCACCAGGG
CTTGGCTGTCCACCGGGGGATGTCACGCTGTGTTCACAACAGCCCCTACCATGTGCCGAGGATGGGGGCGCCCTGCAGGC
AGCGTCCAAGACACTCAGACAGGCTGATCCACACATACAAACTGGATAGACGACCTCATGCCCATTCGGGTACATGGCCG
GGGTAG

Library Parental gene expression (RPM)
ERP005899_liver 3 .68 RPM
ERP005899_muscle 7 .18 RPM
SRP017611_brain 13 .80 RPM
SRP017611_kidney 11 .85 RPM
SRP017611_liver 4 .61 RPM
SRP030211_testis 18 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000025475 ortholog_one2one 2 retrogenes
retro_cpor_343, retro_cpor_79,
Equus caballus ENSECAG00000016497 ortholog_one2one 1 retrogene
retro_ecab_87,
Felis catus ENSFCAG00000002886 ortholog_one2one 1 retrogene
retro_fcat_18,
Homo sapiens ENSG00000132635 ortholog_one2one 2 retrogenes
retro_hsap_2207, retro_hsap_82,
Microcebus murinus ENSMICG00000016578 ortholog_one2one 2 retrogenes
retro_mmur_163, retro_mmur_278,
Myotis lucifugus ENSMLUG00000028662 ortholog_one2one 2 retrogenes
retro_mluc_222, retro_mluc_647,
Macaca mulatta ENSMMUG00000005200 ortholog_one2one 2 retrogenes
retro_mmul_333, retro_mmul_341,
Mus musculus ENSMUSG00000037773 ortholog_one2one 2 retrogenes
retro_mmus_1001, retro_mmus_332,
Otolemur garnettii ENSOGAG00000004701 ortholog_one2one 1 retrogene
retro_ogar_81,
Pongo abelii ENSPPYG00000010833 ortholog_one2one 2 retrogenes
retro_pabe_192, retro_pabe_2080,
Pan troglodytes ENSPTRG00000013185 ortholog_one2one 1 retrogene
retro_ptro_105,
Pteropus vampyrus ENSPVAG00000006834 ortholog_one2one 1 retrogene
retro_pvam_9,
Sus scrofa ENSSSCG00000007168 ortholog_one2one 1 retrogene
retro_sscr_23,
Ictidomys tridecemlineatus ENSSTOG00000016356 ortholog_one2one 2 retrogenes
retro_itri_1190, retro_itri_783,
Tursiops truncatus ENSTTRG00000003464 ortholog_one2one 1 retrogene
retro_ttru_16,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_182 56.07 58.85
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Download FASTA sequences of all ENSBTAG00000003863 retrocopies