Parental gene:

PCED1A, ENSECAG00000016497

Aliases:None
Description:PC-esterase domain containing 1A [Source:HGNC Symbol;Acc:16212]
Organism:Horse (Equus caballus)
Coordinates:22:19935019..19939229(+)


>ENSECAG00000016497
ATGGTCTTCTGTTTGGAAAACGAAGAGCCCCGCCGCCCGCTGCGAAGCACCATGGTCCACTTCCAGGCTTCGGAAGTCCA
GCAGCTGCTACACAACAAGTTCGTGGTCATCTTGGGAGACTCAATCCAGCGGGCTGTGTACAAGGACCTGGTGCTCTTGC
TCCAGAAAGACTCACTTCTCACAGCCGCCCAGCTGAAGGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCT
GGGGGTCAGCTGGGTGAGCTGCACAACGGGACACAGTATCGGGAAGTCCGCCAGTTCTGCTCGGGTTCTGGCCACCACCT
TGTGCGCTTCTACTTCCTCACCCGCGTTTACTCCGAGTACCTCGAGGACGTGCTGGAAGAACTGACATGTGGGCCTGCCC
CGGACCTGGTGATCATCAACTCCTGTCTCTGGGATCTCTCCAGGTATGGCCGCTGCTCAATGGAGAGCTACCGAGAGAAC
CTGGAGCGGGTGTTTGTGCGCATGGACCAAGTGTTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCAATGCCCCTGGG
GGAGCGCGTCACTGGGGGTTTCCTTCTGCCAGAGCAATCCCTGGCGGGCTCTCTGCGGCGGGATGTGGTTGAAGGGAACT
TCTATAGTGCTACGCTGGCTGGGGACCACTTCTATGATGTCCTGGACCTCCATTTTCATTTCCGGCATGCAGTACAGCAC
CGTCACAGGGACGGTATCCACTGGGACCAGCACGCCCACCGCCACCTCTCACAGTTGCTTCTGACTCATGTGGCCGATGC
CTGGGGTGTGGAGCTGCCCAAGCGTGACTATCCCCCTGACCCATGGATTGAGGACTGGCCAGAGCCGGATCATCTGTTCC
AGGGGAGCCAGGGGCAGCCCCCAGACTTCGGGGAGCAGCTGGCCTTGCCCCCACCCCCGCCCTCTCCTTTGCCCCCTCCC
ATGCCTTTTCCCTACCCTCTTCCTCAGCCCTCCCCGCCTCCTCTGTTCCCACCCCTGCCCCAGGATGCCACTTTTTTCCC
AGGCCAACCCTTTCCACCCCCTCAGTTCTTCAATTATAATCCAACGGAAGACTTCTCGATGCCACCCCACTTAGGATGCG
GCCCTGGAGTGAACTTTGTGCCTGGCCCCCTGCCACCTCCAGGCCCAGGCGCTATCCCCCATGGTCATCACTGGGGCCCA
GTGGTCCACCGGGGGATGCCACGCTGTGTTCCCAACAGCCCCTACCATGTGCCGAGGATGGGGGGGCCCTGCAGGCAGCG
GCTCAGACACTCAGACAGACTGATCCACACATACAAACTGGACAGACGGCTTCCTGCCCATTCGGGGACATGGCCTGGGT
AA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 52 .90 RPM
SRP021940_embryo 83 .80 RPM
SRP021940_cerebellum 56 .50 RPM
SRP021940_testis 34 .59 RPM
SRP021940_placental_villous 23 .86 RPM
SRP021940_articular_cartilage 53 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003863 ortholog_one2one 1 retrogene
retro_btau_182,
Cavia porcellus ENSCPOG00000025475 ortholog_one2one 2 retrogenes
retro_cpor_343, retro_cpor_79,
Felis catus ENSFCAG00000002886 ortholog_one2one 1 retrogene
retro_fcat_18,
Homo sapiens ENSG00000132635 ortholog_one2one 2 retrogenes
retro_hsap_2207, retro_hsap_82,
Microcebus murinus ENSMICG00000016578 ortholog_one2one 2 retrogenes
retro_mmur_163, retro_mmur_278,
Myotis lucifugus ENSMLUG00000028662 ortholog_one2one 2 retrogenes
retro_mluc_222, retro_mluc_647,
Macaca mulatta ENSMMUG00000005200 ortholog_one2one 2 retrogenes
retro_mmul_333, retro_mmul_341,
Mus musculus ENSMUSG00000037773 ortholog_one2one 2 retrogenes
retro_mmus_1001, retro_mmus_332,
Otolemur garnettii ENSOGAG00000004701 ortholog_one2one 1 retrogene
retro_ogar_81,
Pongo abelii ENSPPYG00000010833 ortholog_one2one 2 retrogenes
retro_pabe_192, retro_pabe_2080,
Pan troglodytes ENSPTRG00000013185 ortholog_one2one 1 retrogene
retro_ptro_105,
Pteropus vampyrus ENSPVAG00000006834 ortholog_one2one 1 retrogene
retro_pvam_9,
Sus scrofa ENSSSCG00000007168 ortholog_one2one 1 retrogene
retro_sscr_23,
Ictidomys tridecemlineatus ENSSTOG00000016356 ortholog_one2one 2 retrogenes
retro_itri_1190, retro_itri_783,
Tursiops truncatus ENSTTRG00000003464 ortholog_one2one 1 retrogene
retro_ttru_16,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_87 61.36 73.51
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Download FASTA sequences of all ENSECAG00000016497 retrocopies