Parental gene:

PCED1A, ENSG00000132635

Aliases:PCED1A, C20orf81, FAM113A, bA12M19.1
Description:PC-esterase domain containing 1A [Source:HGNC Symbol;Acc:16212]
Organism:Human (Homo sapiens)
Coordinates:20:2815959..2821836(-)


>ENSG00000132635
ATGGTCTTCTGTCTGTCGAGCGAGGAGCCGCGCCGCCCGCTGCGAAGCGACATGGTCCACTTCCAGGCCTCGGAAGTCCA
GCAGCTGCTACACAACAAGTTCGTGGTCATCTTGGGGGACTCCATTCAGAGGGCTGTGTACAAGGACCTGGTGCTCTTGC
TCCAGAAAGACTCACTGCTCACAGCTGCCCAGCTGAAAGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCT
GGGGGCCAGCTGGGCGAGCTGCACAACGGGACACAGTATCGTGAGGTCCGCCAGTTCTGCTCGGGCTCTGGCCACCACCT
TGTGCGCTTCTACTTCCTCACTCGTGTTTACTCCGAGTACCTTGAGGATGTTCTGGAAGAGCTGACATATGGACCTGCCC
CGGACCTGGTGATCATCAACTCCTGCCTCTGGGATCTCTCCAGATATGGTCGCTGCTCAATGGAGAGCTACCGGGAGAAC
CTGGAGCGGGTGTTTGTGCGCATGGACCAAGTATTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCGATGCCCCTCGG
GGAACGTATCACTGGGGGTTTCCTCCTGCCAGAGCTCCAGCCCCTGGCAGGCTCCCTGCGGCGGGATGTGGTTGAAGGGA
ACTTCTACAGTGCTACGCTGGCCGGGGACCACTGCTTTGATGTCCTAGACCTCCACTTTCACTTCCGGCATGCAGTACAG
CACCGTCATCGGGATGGTGTCCACTGGGACCAGCATGCACACCGCCACCTCTCACACCTGCTTCTGACCCATGTGGCTGA
CGCCTGGGGCGTGGAGCTGCCCAAGCGTGGCTATCCCCCTGACCCGTGGATTGAGGACTGGGCAGAGATGAATCATCCAT
TCCAGGGAAGCCATAGGCAGACCCCAGACTTCGGGGAGCACCTGGCCTTGCTCCCACCCCCACCTTCTTCTTTGCCTCCT
CCCATGCCTTTTCCCTACCCGCTTCCTCAGCCCTCGCCACCTCCCCTCTTCCCACCCCTGCCCCAGGATACCCCTTTTTT
CCCAGGCCAGCCCTTCCCACCCCATGAATTCTTCAACTATAATCCAGTGGAGGACTTCTCGATGCCACCCCACTTAGGAT
GTGGCCCTGGAGTGAACTTTGTGCCTGGCCCTCTGCCACCTCCAATCCCTGGCCCTAATCCCCATGGTCAGCACTGGGGC
CCAGTGGTCCACCGGGGGATGCCACGCTATGTTCCTAACAGCCCCTACCATGTGCGGAGAATGGGGGGGCCCTGCAGGCA
GCGGCTCAGACACTCAGAGAGACTGATCCACACATACAAACTGGACAGACGGCCTCCTGCCCATTCGGGGACATGGCCTG
GGTAG

Library Parental gene expression (RPM)
bodymap2_adipose 10 .63 RPM
bodymap2_adrenal 21 .68 RPM
bodymap2_brain 9 .26 RPM
bodymap2_breast 10 .19 RPM
bodymap2_colon 6 .34 RPM
bodymap2_heart 2 .95 RPM
bodymap2_kidney 10 .48 RPM
bodymap2_liver 5 .17 RPM
bodymap2_lung 12 .03 RPM
bodymap2_lymph_node 27 .65 RPM
bodymap2_ovary 17 .68 RPM
bodymap2_prostate 14 .06 RPM
bodymap2_skeletal_muscle 1 .93 RPM
bodymap2_testis 9 .58 RPM
bodymap2_thyroid 34 .63 RPM
bodymap2_white_blood_cells 7 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003863 ortholog_one2one 1 retrogene
retro_btau_182,
Cavia porcellus ENSCPOG00000025475 ortholog_one2one 2 retrogenes
retro_cpor_343, retro_cpor_79,
Equus caballus ENSECAG00000016497 ortholog_one2one 1 retrogene
retro_ecab_87,
Felis catus ENSFCAG00000002886 ortholog_one2one 1 retrogene
retro_fcat_18,
Microcebus murinus ENSMICG00000016578 ortholog_one2one 2 retrogenes
retro_mmur_163, retro_mmur_278,
Myotis lucifugus ENSMLUG00000028662 ortholog_one2one 2 retrogenes
retro_mluc_222, retro_mluc_647,
Macaca mulatta ENSMMUG00000005200 ortholog_one2one 2 retrogenes
retro_mmul_333, retro_mmul_341,
Mus musculus ENSMUSG00000037773 ortholog_one2one 2 retrogenes
retro_mmus_1001, retro_mmus_332,
Otolemur garnettii ENSOGAG00000004701 ortholog_one2one 1 retrogene
retro_ogar_81,
Pongo abelii ENSPPYG00000010833 ortholog_one2one 2 retrogenes
retro_pabe_192, retro_pabe_2080,
Pan troglodytes ENSPTRG00000013185 ortholog_one2one 1 retrogene
retro_ptro_105,
Pteropus vampyrus ENSPVAG00000006834 ortholog_one2one 1 retrogene
retro_pvam_9,
Sus scrofa ENSSSCG00000007168 ortholog_one2one 1 retrogene
retro_sscr_23,
Ictidomys tridecemlineatus ENSSTOG00000016356 ortholog_one2one 2 retrogenes
retro_itri_1190, retro_itri_783,
Tursiops truncatus ENSTTRG00000003464 ortholog_one2one 1 retrogene
retro_ttru_16,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_82 67.04 59.03
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2. retro_hsap_2207 63.16 58.37
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Download FASTA sequences of all ENSG00000132635 retrocopies