Parental gene:

BT.89909, ENSBTAG00000012586

Aliases:HSPD1, HSP60
Description:60 kDa heat shock protein, mitochondrial [Source:RefSeq peptide;Acc:NP_001160080]
Organism:Cow (Bos taurus)
Coordinates:2:86438978..86449372(-)


>ENSBTAG00000012586
ATGCTTCGATTACCCGCAGTCCTTCGTCAAATGAGGCCAGTGTCCAGGGCACTGGCTCCTCATCTCACTCGGGCTTATGC
CAAAGATGTAAAATTCGGTGCAGATGCTCGAGCCTTAATGCTTCAAGGTGTAGACCTTTTAGCCGATGCTGTAGCCGTTA
CTATGGGGCCAAAGGGAAGGACAGTGATTATTGAACAGAGTTGGGGAAGTCCCAAAGTGACAAAAGATGGTGTGACTGTT
GCAAAGTCTATTGATTTAAAAGATAAATATAAAAATATTGGCGCTAAACTTGTTCAAGATGTTGCCAATAACACAAATGA
AGAGGCGGGGGATGGCACCACTACTGCTACTGTACTGGCACGCTCTATTGCCAAGGAAGGCTTCGAGAAGATTAGCAAAG
GTGCTAATCCAGTGGAAATCAGGAGAGGTGTGATGTTAGCTGTTGATGCTGTAATTGCTGAACTTAAGAAGCAGTCTAAA
CCTGTGACAACCCCCGAAGAGATTGCTCAGGTTGCTACAATTTCTGCAAATGGAGACAAAGAAATTGGCAACATCATTTC
TGATGCCATGAAAAAAGTTGGAAGAAAGGGTGTTATCACAGTAAAGGATGGAAAAACACTGAATGATGAATTAGAAATTA
TTGAAGGCATGAAGTTTGACAGAGGATATATTTCTCCATACTTTATTAATACATCAAAAGGTCAGAAATGTGAATTCCAA
GATGCATATGTTCTATTGAGTGAAAAGAAAATTTCTAGTGTCCAATCCATTGTTCCTGCTCTTGAAATTGCCAATGCTCA
CCGGAAGCCCTTGGTCATAATTGCTGAAGATGTGGATGGAGAAGCTCTAAGTACCCTTGTTTTGAATAGGTTGAAGGTTG
GTCTTCAAGTTGTGGCAGTCAAAGCTCCAGGTTTTGGTGACAATAGAAAGAACCAGCTTAAAGACATGGCTATTGCTACT
GGGGGTGCAGTATTTGGAGAAGAAGGACTAAATCTAAATCTTGAAGATGTTCAGCCTCATGACTTAGGAAAAGTTGGAGA
GGTCATTGTGACCAAAGATGATGCCATGCTCTTGAAAGGAAAAGGTGACAAGGCTCAAATTGAGAAGCGTATCCAAGAGA
TCATTGAGCAGTTAGATATCACAACTAGTGAATATGAAAAGGAAAAACTGAATGAACGTCTGGCAAAACTCTCAGATGGT
GTTGCTGTGTTGAAGGTTGGTGGGACAAGTGATGTTGAAGTGAATGAAAAGAAAGACAGAGTTACAGATGCTCTTAATGC
CACACGAGCTGCTGTTGAAGAAGGCATTGTTCTGGGAGGGGGCTGTGCCCTGCTTCGGTGCATTCCAGCCTTGGAGTCAA
TAACTCCAGCTAATGAAGATCAAAAAACAGGTATAGAAATAATTAAAAAAACACTCAAAATTCCTGCAATGACCATTGCT
AAGAATGCAGGTGTTGAAGGATCATTGATAGTTGAGAAAATTATGCAGAGTTCTTCAGAAGTCGGTTATGATGCTATGCT
TGGAGATTTTGTGAATATGGTGGAAAAAGGAATCATTGATCCAACTAAGGTTGTAAGAACTGCATTACTGGATGCTGCCG
GAGTGGCCTCTCTCTTAACAACAGCAGAAGTTGTCGTCACAGAAATTCCTAAAGAAGAGAAGGATCCTGGAATGGGTGGC
ATGGGTGGAATGGGAGGTGGCATGGGAGGTGGCATGTTCTAA

Library Parental gene expression (RPM)
ERP005899_liver 156 .66 RPM
ERP005899_muscle 184 .29 RPM
SRP017611_brain 63 .86 RPM
SRP017611_kidney 228 .79 RPM
SRP017611_liver 160 .61 RPM
SRP030211_testis 84 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013770 ortholog_one2one 1 retrogene
retro_amel_771,
Canis familiaris ENSCAFG00000010865 ortholog_one2one 4 retrogenes
retro_cfam_1185, retro_cfam_1620, retro_cfam_2165, retro_cfam_614,
Callithrix jacchus ENSCJAG00000003990 possible_ortholog 6 retrogenes
retro_cjac_1516, retro_cjac_1534, retro_cjac_1975, retro_cjac_3172, retro_cjac_3400, retro_cjac_4096,
Dasypus novemcinctus ENSDNOG00000013226 ortholog_one2one 3 retrogenes
retro_dnov_1990, retro_dnov_2113, retro_dnov_2512,
Echinops telfairi ENSETEG00000009184 possible_ortholog 4 retrogenes
retro_etel_1440, retro_etel_426, retro_etel_885, retro_etel_925,
Loxodonta africana ENSLAFG00000000053 ortholog_one2one 1 retrogene
retro_lafr_476,
Macropus eugenii ENSMEUG00000011987 ortholog_one2one 2 retrogenes
retro_meug_1688, retro_meug_224,
Myotis lucifugus ENSMLUG00000000871 possible_ortholog 4 retrogenes
retro_mluc_1458, retro_mluc_2280, retro_mluc_2348, retro_mluc_601,
Macaca mulatta ENSMMUG00000010489 possible_ortholog 1 retrogene
retro_mmul_83,
Monodelphis domestica ENSMODG00000012289 ortholog_one2one 3 retrogenes
retro_mdom_427, retro_mdom_493, retro_mdom_756,
Mustela putorius furo ENSMPUG00000007818 ortholog_one2one 3 retrogenes
retro_mputfur_1118, retro_mputfur_245, retro_mputfur_434,
Otolemur garnettii ENSOGAG00000034053 possible_ortholog 5 retrogenes
retro_ogar_2335, retro_ogar_2420, retro_ogar_2740, retro_ogar_3221, retro_ogar_3497,
Rattus norvegicus ENSRNOG00000014525 possible_ortholog 9 retrogenes
retro_rnor_1000, retro_rnor_1006, retro_rnor_1308, retro_rnor_1578, retro_rnor_1585, retro_rnor_2812, retro_rnor_2835, retro_rnor_596, retro_rnor_905,
Tursiops truncatus ENSTTRG00000003417 ortholog_one2one 3 retrogenes
retro_ttru_1661, retro_ttru_1798, retro_ttru_951,
Xenopus tropicalis ENSXETG00000007509 ortholog_one2one 1 retrogene
retro_xtro_63,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_988 99.28 96.86
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Download FASTA sequences of all ENSBTAG00000012586 retrocopies