Parental gene:

HSPD1, ENSCJAG00000003990

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:112797822..112811028(-)


>ENSCJAG00000003990
ATGCTTCGGTTACCCACCGTCTTTCGCCAGATGAGACCGGTTTCCAGGGTCCTGGCTCCTCATCTCACTCGGGCTTACGC
CAAAGATGTAAAATTTGGTGCAGATGCCCGAGCCTTAATGCTTCAAGGTGTAGACCTTTTAGCCGATGCCGTAGCTGTTA
CAATGGGGCCAAAGGGAAGAACAGTGATTATTGAGCAAAGCTGGGGAAGTCCCAAAGTAACAAAAGATGGTGTGACTGTT
GCAAAGTCAATTGACTTAAAGGATAAATATAAAAATATTGGAGCTAAACTTGTTCAAGATGTTGCCAATAACACAAATGA
AGAGGCTGGGGATGGCACTACCACGGCTACTGTACTGGCACGCTCTATTGCCAAGGAAGGCTTCGAGAAGATTAGCAAAG
GTGCTAATCCAGTGGAAATCAGGAGAGAACTAGGTGTGATGTTAGCTGTTGATGCTGTAATTGCCGAACTTAAAAAGCAG
TCTAAACCTGTGACCACCCCCGAAGAAATTGCACAGGTTGCTACAATTTCTGCAAATGGAGACAAAGAAATTGGGAATAT
CATCTCTGATGCAATGAAAAAGGTTGGAAGAAAGGGTGTCATCACAGTAAAGGATGGAAAAACACTTAATGATGAATTAG
AAATTATTGAAGGCATGAAGTTTGATCGAGGCTATATTTCTCCATACTTTATTAATACATCAAAAGGTCAGAAATGTGAA
TTCCAGGATGCCTATGTTCTGTTGAGTGAAAAGAAAATTTCTAGTGTCCAGTCGATTGTACCTGCTCTTGAAATTGCCAA
TGCTCACCGTAAGCCTTTGGTCATAATCGCTGAAGACGTTGATGGAGAAGCTCTAAGTACACTTGTCTTGAATAGGCTAA
AGGTTGGTCTTCAGGTTGTGGCAGTCAAGGCTCCAGGGTTTGGTGACAATAGAAAGAACCAACTTAAAGATATGGCTATT
GCTACTGGTGGTGCAGTGTTTGGAGAAGAGGGATTGACCCTAAATCTTGAAGATGTTCAGCCTCATGACTTAGGGAAAGT
TGGAGAGGTCATTGTGACCAAAGATGATGCCATGCTCTTAAAAGGAAAAGGTGACAAGGCTCAAATTGAAAAACGTATTC
AAGAAATCATTGAGCAGCTAGATGTCACAACTAGTGAATATGAAAAGGAAAAACTGAATGAACGGCTGGCAAAACTTTCA
GATGGAGTAGCTGTGCTGAAGGTTGGTGGGACAAGTGATGTTGAAGTGAATGAAAAGAAAGACAGAGTTACAGATGCCCT
TAATGCTACAAGAGCTGCTGTTGAAGAAGGCATTGTTTTGGGAGGGGGTTGTGCCCTGCTTCGGTGCATTCCAGCCTTAG
ACTCATTGACTCCAGCTAATGAAGATCAAAAAATTGGTATAGAAATTATTAAAAGAACACTCAAAATTCCAGCAATGACC
ATTGCTAAGAATGCAGGTGTTGAAGGATCTTTGATAGTTGAGAAAATTATGCAAAGTTCCTCAGAAGTTGGTTATGATGC
TATGGCTGGAGATTTTGTGAATATGGTGGATAAAGGGATTATTGACCCAACAAAGGTTGTGAGAACTGCTTTATTGGATG
CTGCTGGTGTGGCCTCTCTGTTAACTACAGCAGAAGTTGTAGTCACAGAAATTCCTAAAGAAGAGAAAGACCCTGGAATG
GGTGCAATGGGTGGAATGGGAGGTGGTATGGGAGGTGGCATGTTCTAA

Library Parental gene expression (RPM)
SRP051959_colon 61 .81 RPM
SRP051959_heart 59 .55 RPM
SRP051959_kidney 131 .50 RPM
SRP051959_liver 191 .35 RPM
SRP051959_lung 48 .36 RPM
SRP051959_lymph_node 75 .59 RPM
SRP051959_skeletal_muscle 48 .39 RPM
SRP051959_spleen 61 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013770 possible_ortholog 1 retrogene
retro_amel_771,
Bos taurus ENSBTAG00000012586 possible_ortholog 1 retrogene
retro_btau_988,
Canis familiaris ENSCAFG00000010865 possible_ortholog 4 retrogenes
retro_cfam_1185, retro_cfam_1620, retro_cfam_2165, retro_cfam_614,
Choloepus hoffmanni ENSCHOG00000007401 possible_ortholog 5 retrogenes
retro_chof_1105, retro_chof_1300, retro_chof_1822, retro_chof_2000, retro_chof_2397,
Dasypus novemcinctus ENSDNOG00000013226 possible_ortholog 3 retrogenes
retro_dnov_1990, retro_dnov_2113, retro_dnov_2512,
Echinops telfairi ENSETEG00000009184 possible_ortholog 4 retrogenes
retro_etel_1440, retro_etel_426, retro_etel_885, retro_etel_925,
Homo sapiens ENSG00000144381 ortholog_one2one 7 retrogenes
retro_hsap_1006, retro_hsap_2770, retro_hsap_2987, retro_hsap_3151, retro_hsap_3494, retro_hsap_3930, retro_hsap_4018,
Gorilla gorilla ENSGGOG00000008267 ortholog_one2one 6 retrogenes
retro_ggor_1927, retro_ggor_2069, retro_ggor_2361, retro_ggor_2698, retro_ggor_800, retro_ggor_985,
Loxodonta africana ENSLAFG00000000053 possible_ortholog 1 retrogene
retro_lafr_476,
Macropus eugenii ENSMEUG00000011987 ortholog_one2many 2 retrogenes
retro_meug_1688, retro_meug_224,
Myotis lucifugus ENSMLUG00000000871 possible_ortholog 4 retrogenes
retro_mluc_1458, retro_mluc_2280, retro_mluc_2348, retro_mluc_601,
Macaca mulatta ENSMMUG00000010489 ortholog_one2many 1 retrogene
retro_mmul_83,
Monodelphis domestica ENSMODG00000012289 ortholog_one2many 3 retrogenes
retro_mdom_427, retro_mdom_493, retro_mdom_756,
Mustela putorius furo ENSMPUG00000007818 possible_ortholog 3 retrogenes
retro_mputfur_1118, retro_mputfur_245, retro_mputfur_434,
Mus musculus ENSMUSG00000025980 ortholog_one2one 5 retrogenes
retro_mmus_1225, retro_mmus_2494, retro_mmus_3206, retro_mmus_439, retro_mmus_706,
Nomascus leucogenys ENSNLEG00000006874 ortholog_one2one 7 retrogenes
retro_nleu_1349, retro_nleu_2238, retro_nleu_229, retro_nleu_657, retro_nleu_675, retro_nleu_691, retro_nleu_787,
Otolemur garnettii ENSOGAG00000034053 possible_ortholog 5 retrogenes
retro_ogar_2335, retro_ogar_2420, retro_ogar_2740, retro_ogar_3221, retro_ogar_3497,
Pongo abelii ENSPPYG00000013046 ortholog_one2one 5 retrogenes
retro_pabe_2040, retro_pabe_2244, retro_pabe_2476, retro_pabe_2887, retro_pabe_848,
Pteropus vampyrus ENSPVAG00000008306 possible_ortholog 1 retrogene
retro_pvam_250,
Rattus norvegicus ENSRNOG00000014525 ortholog_one2many 9 retrogenes
retro_rnor_1000, retro_rnor_1006, retro_rnor_1308, retro_rnor_1578, retro_rnor_1585, retro_rnor_2812, retro_rnor_2835, retro_rnor_596, retro_rnor_905,
Ictidomys tridecemlineatus ENSSTOG00000028470 possible_ortholog 1 retrogene
retro_itri_224,
Tarsius syrichta ENSTSYG00000000513 possible_ortholog 6 retrogenes
retro_tsyr_1091, retro_tsyr_1181, retro_tsyr_1445, retro_tsyr_2082, retro_tsyr_395, retro_tsyr_804,
Tursiops truncatus ENSTTRG00000003417 possible_ortholog 3 retrogenes
retro_ttru_1661, retro_ttru_1798, retro_ttru_951,
Xenopus tropicalis ENSXETG00000007509 ortholog_one2many 1 retrogene
retro_xtro_63,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1516 98.56 96.86
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2. retro_cjac_1534 85.34 97.22
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3. retro_cjac_1975 81.69 96.68
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4. retro_cjac_3172 70.03 51.13
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5. retro_cjac_3400 97.16 92.15
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6. retro_cjac_4096 93.71 97.03
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Download FASTA sequences of all ENSCJAG00000003990 retrocopies