RetrogeneDB ID: | retro_etel_925 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_185179:3060..3848(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000009184 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.3 % |
Parental protein coverage: | 51.65 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 4 |
Parental | GRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGF |
GRTVI.EQSWGSPKVTKDGVTVAK.ID.KDKYK..GA.LV.DV.N.TN.E.G.GTT.AT.L..SI.KEG. | |
Retrocopy | GRTVITEQSWGSPKVTKDGVTVAKLID*KDKYKMAGARLVRDVSNSTNKESGKGTTAATALVPSITKEGL |
Parental | EKISKGANPVEIRR-GVMLAVDAVIAELKKQSKPVTTPDE-IAQV-ATISANGDKEIGTIISDAMKKVGR |
.K...GANPVEIRR.G...A.DA.IAELK..S.PVTTP.E..AQV.A..SA..DKE.GT..SDAM...GR | |
Retrocopy | KKNRQGANPVEIRR<GEGVAGDAAIAELKR*SQPVTTPEE<MAQV<AVTSAS*DKEMGTLVSDAMTMAGR |
Parental | KGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTAKGQKCEFQDAYVL-LSEKKISSIQSIV-PAQEI |
K.V.T.K.GKTL..E.EI.......R....P.F.......K....DAYVL..SEKKISSIQSI..PA.EI | |
Retrocopy | KVVTTGKAGKTLKGE*EIAKAEV*PRFHF-PIFS*CSQRSKA*VPDAYVL<ISEKKISSIQSIIAPALEI |
Parental | ANAHRKPLVIXXXXXXXXXXXXXXXXXLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAV |
ANAHRKPL.I.................L.V...VVA...P..G.NRK..LKD.AI.TGG.V | |
Retrocopy | ANAHRKPLAIIGEGVDGEAPSALILSRLQVDGRVVAENPPALGENRK--LKDVAIVTGGSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |