RetrogeneDB ID: | retro_cfam_1185 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 25:26497251..26498137(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000010865 | ||
Aliases: | None | ||
Description: | 60 kDa heat shock protein, mitochondrial [Source:UniProtKB/TrEMBL;Acc:E2QUU5] |
Percent Identity: | 86.42 % |
Parental protein coverage: | 52.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | EIRRGVMLAVDAVIAELKKQSKPVTTPEE-IAQVATISANGDKEIGNIISDAMKKVGRKGVITV-KDGKT |
EIRRGVMLAVDAVIAELKKQSKPVT.PEE.IAQVA.ISANGDKEIGNIISDAM.KVGRKGVITV.K..K. | |
Retrocopy | EIRRGVMLAVDAVIAELKKQSKPVTSPEE>IAQVALISANGDKEIGNIISDAMEKVGRKGVITV<KEWK- |
Parental | LNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAE |
.N.ELEIIE.MKFDRGYIS.YFINTS.GQKCEFQ.AYVLLSEKKI.SVQ..VPALEIANAH.K.L.IIAE | |
Retrocopy | -NTELEIIEDMKFDRGYISLYFINTSRGQKCEFQNAYVLLSEKKIPSVQFFVPALEIANAHHKSLIIIAE |
Parental | DVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVG |
DVDGE.LSTLVL.RLK.GLQVVAVKAP.F.DNRKNQ.KD.AIATGGAVFGEEGLTLNLEDV..HDL.KVG | |
Retrocopy | DVDGETLSTLVLKRLKFGLQVVAVKAPDFRDNRKNQVKDTAIATGGAVFGEEGLTLNLEDV--HDLRKVG |
Parental | EVIVTKDDAMLLKGKGDKAQIEKRIQEIIEQLDITTSEYE-KEKLNERLAKLSDGVAVLKVGGTSDVEVN |
EVIVTKD.AMLLKG.GDKAQIEK.IQEIIEQLDITTSEYE.KEKLNERLAKLSDGVAVLKV.GT.DVEVN | |
Retrocopy | EVIVTKDEAMLLKGRGDKAQIEKCIQEIIEQLDITTSEYE>KEKLNERLAKLSDGVAVLKVDGTNDVEVN |
Parental | EKKDRVTDALNATRAAVEEGIV |
EKKDRV.DALNAT.AA...GIV | |
Retrocopy | EKKDRVRDALNATGAALAKGIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 143 .76 RPM |
SRP017611_brain | 0 .00 RPM | 134 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 641 .35 RPM |
SRP017611_liver | 0 .00 RPM | 336 .10 RPM |